STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6436PFAM: protein of unknown function DUF1707; KEGG: pha:PSHAa0324 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Amir_6435
PFAM: protein of unknown function DUF397.
       0.625
Amir_6434
SMART: helix-turn-helix domain protein; KEGG: met:M446_4768 XRE family transcriptional regulator.
       0.601
Amir_5428
Hypothetical protein; KEGG: similar to Williams syndrome transcription factor.
  
     0.586
Amir_0170
Hypothetical protein.
  
     0.580
Amir_6397
PFAM: protein of unknown function DUF1707.
  
     0.564
Amir_0613
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sfu:Sfum_2006 integral membrane sensor signal transduction histidine kinase.
  
     0.555
Amir_5796
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: GG12650 gene product from transcript GG12650- RA.
  
  
 0.519
Amir_5813
KEGG: aba:Acid345_3530 hypothetical protein.
  
  
 0.475
Amir_6950
KEGG: aba:Acid345_3530 hypothetical protein.
  
  
 0.475
Amir_2631
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rso:RS02380 two-component sensor histidine kinase transcription regulator protein.
  
     0.474
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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