STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6479PFAM: membrane-bound metal-dependent hydrolase; KEGG: mag:amb4172 membrane-bound metal-dependent hydrolase. (268 aa)    
Predicted Functional Partners:
Amir_1576
KEGG: mpt:Mpe_A1758 hypothetical protein.
  
     0.737
Amir_0870
KEGG: afw:Anae109_1073 hypothetical protein.
  
     0.712
Amir_0871
KEGG: scl:sce2127 hypothetical protein.
  
     0.702
Amir_0869
KEGG: scl:sce2125 hypothetical protein.
  
     0.696
Amir_6018
PFAM: protein of unknown function DUF397.
  
     0.693
Amir_6481
PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: rle:pRL110201 putative chaperone.
 
    0.661
Amir_5519
Conserved hypothetical protein.
  
     0.646
Amir_0542
PFAM: cell divisionFtsK/SpoIIIE; KEGG: bpt:Bpet4245 hypothetical protein.
  
     0.610
Amir_0153
Hypothetical protein; KEGG: SAMD1; sterile alpha motif domain containing 1.
  
     0.575
Amir_0910
TIGRFAM: methyltransferase FkbM family; KEGG: pzu:PHZ_c0476 hypothetical protein.
  
     0.530
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.