STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6486PFAM: protein of unknown function DUF990; KEGG: aav:Aave_2071 protein of unknown function DUF990. (265 aa)    
Predicted Functional Partners:
Amir_6485
ABC-type uncharacterized transport system permease component-like protein; KEGG: reu:Reut_A1068 putative ABC transporter permease protein.
  
 0.983
Amir_6487
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce6750 ABC transporter, ATP-binding protein.
 
  
 0.972
Amir_6488
Hypothetical protein.
       0.649
Amir_5693
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
       0.495
Amir_6489
PFAM: Domain of unknown function DUF1918.
       0.438
Amir_6483
Hypothetical protein.
       0.404
Amir_6484
Hypothetical protein.
       0.404
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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