STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6489PFAM: Domain of unknown function DUF1918. (63 aa)    
Predicted Functional Partners:
Amir_6488
Hypothetical protein.
       0.527
Amir_3013
Hypothetical protein.
 
     0.483
Amir_2415
Hypothetical protein.
  
     0.482
Amir_3014
Hypothetical protein.
 
     0.482
Amir_2413
KEGG: hypothetical protein.
  
    0.445
Amir_2210
PFAM: protein of unknown function DUF75; KEGG: sfu:Sfum_3209 hypothetical protein.
   
    0.440
Amir_5325
PFAM: protein of unknown function DUF75; KEGG: sfu:Sfum_3209 hypothetical protein.
   
    0.440
Amir_6485
ABC-type uncharacterized transport system permease component-like protein; KEGG: reu:Reut_A1068 putative ABC transporter permease protein.
       0.438
Amir_6486
PFAM: protein of unknown function DUF990; KEGG: aav:Aave_2071 protein of unknown function DUF990.
       0.438
Amir_6487
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce6750 ABC transporter, ATP-binding protein.
       0.438
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.