STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6778KEGG: pag:PLES_38291 hypothetical protein. (670 aa)    
Predicted Functional Partners:
Amir_5547
Putative signal transduction protein with Nacht domain; KEGG: disease resistance-responsive family protein.
 
     0.769
Amir_4546
PFAM: integrase family protein; KEGG: aeh:Mlg_1488 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.762
Amir_4302
PFAM: protein of unknown function DUF88; KEGG: dal:Dalk_1950 cold-shock DNA-binding domain protein.
  
     0.752
Amir_1079
PFAM: Tetratricopeptide TPR_4; KEGG: bid:Bind_1912 TPR repeat-containing protein.
  
     0.749
Amir_5677
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce3550 hypothetical protein.
 
     0.720
Amir_6458
Hypothetical protein; KEGG: Muc19; mucin 19.
  
     0.709
Amir_5210
Transcriptional regulator, XRE family.
  
     0.706
Amir_6219
Hypothetical protein; KEGG: GH21940 gene product from transcript GH21940- RA.
  
     0.706
Amir_5315
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ade:Adeh_3289 SARP family transcriptional regulator.
  
     0.688
Amir_5802
SMART: regulatory protein MerR; KEGG: bmn:BMA10247_A1013 MerR family transcriptional regulator.
  
     0.684
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.