STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6785PFAM: protein of unknown function DUF214; KEGG: ank:AnaeK_1836 protein of unknown function DUF214. (786 aa)    
Predicted Functional Partners:
Amir_6781
PFAM: transcriptional regulator PadR family protein; KEGG: nar:Saro_2546 PadR family transcriptional regulator.
 
   
 0.904
Amir_6782
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tgr:Tgr7_1366 lipoprotein releasing system, ATP-binding protein.
 
  
 0.872
Amir_6786
PFAM: protein of unknown function DUF214; KEGG: rru:Rru_A3653 hypothetical protein.
 
    
0.824
Amir_6784
Hypothetical protein.
       0.773
Amir_0161
TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: ADR019Cp; K01066 esterase / lipase.
  
     0.635
Amir_6787
KEGG: acp:A2cp1_2390 transcriptional regulator, Fis family.
       0.584
Amir_3030
Hypothetical protein; Belongs to the protease inhibitor I16 (SSI) family.
  
     0.563
Amir_6783
PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
 
    
0.510
Amir_6018
PFAM: protein of unknown function DUF397.
  
     0.502
Amir_6780
PFAM: protein of unknown function DUF1470; KEGG: sme:SMc00597 hypothetical protein.
 
     0.459
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.