STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6837TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: mxa:MXAN_6341 glycine cleavage system T protein; Belongs to the GcvT family. (364 aa)    
Predicted Functional Partners:
Amir_6836
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: ank:AnaeK_2300 ferric uptake regulator, Fur family; Belongs to the Fur family.
       0.838
Amir_1567
PFAM: L-asparaginase II; KEGG: sil:SPO3349 L-asparaginase.
      0.750
Amir_6838
3-keto-5-aminohexanoate cleavage enzyme; PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 hypothetical protein.
       0.723
Amir_6835
PFAM: aminotransferase class IV; KEGG: bbr:BB0169 class IV aminotransferase.
       0.697
Amir_5316
PFAM: MOSC domain containing protein; KEGG: mex:Mext_4291 MOSC domain-containing protein.
      0.687
Amir_6839
Hypothetical protein.
       0.633
Amir_5854
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cvi:CV_0813 uroporphyrin-III C- methyltransferase.
     
 0.630
Amir_1364
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bvi:Bcep1808_0647 iron-sulfur cluster insertion protein ErpA; Belongs to the HesB/IscA family.
 
 
 0.629
Amir_3929
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: mfa:Mfla_0439 aminomethyltransferase; Belongs to the GcvT family.
  
   
 0.605
Amir_0233
PFAM: metallophosphoesterase; KEGG: hch:HCH_04892 phosphohydrolase.
  
     0.585
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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