STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_7022PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: bja:blr4240 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Amir_7020
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0445 ABC transporter ATP-binding protein.
 
     0.601
Amir_7019
KEGG: esa:ESA_01546 hypothetical protein.
       0.544
Amir_7021
Hypothetical protein.
       0.544
Amir_4020
PFAM: Luciferase-like monooxygenase; KEGG: oca:OCAR_4999 hypothetical protein.
  
   
 0.521
Amir_2715
PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4431 coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin.
  
   
 0.507
Amir_2098
PFAM: Luciferase-like monooxygenase; KEGG: pde:Pden_1120 luciferase family protein.
  
   
 0.478
Amir_4233
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
   
 0.463
Amir_3982
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.453
Amir_1342
PFAM: Luciferase-like monooxygenase; KEGG: rpi:Rpic_0157 luciferase-like monooxygenase.
  
   
 0.444
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
      
 0.440
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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