Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACU84963.1Hypothetical protein. (315 aa)    
Predicted Functional Partners:
ACU85710.1
Hypothetical protein.
  
     0.735
dapD
Tetrahydrodipicolinate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
       0.730
ACU85859.1
PFAM: Protein of unknown function (DUF2505).
  
     0.652
ACU84989.1
Predicted metal-dependent hydrolase; PFAM: Protein of unknown function DUF45.
 
     0.644
ACU85276.1
Hypothetical protein.
  
     0.635
ACU85186.1
PFAM: Septum formation initiator.
  
   
 0.599
ACU85727.1
PFAM: Protein of unknown function (DUF2550).
  
     0.570
ACU85213.1
Hypothetical protein.
  
     0.559
ACU85884.1
Hypothetical protein.
 
 
 
 0.552
ACU84474.1
Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain.
 
 
 
 0.500
Your Current Organism:
Brachybacterium faecium
NCBI taxonomy Id: 446465
Other names: B. faecium DSM 4810, Brachybacterium faecium ATCC 43885, Brachybacterium faecium DSM 4810, Brachybacterium faecium str. DSM 4810, Brachybacterium faecium strain DSM 4810
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