Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACU85399.1PFAM: Bacterial regulatory proteins, tetR family. (221 aa)    
Predicted Functional Partners:
ACU85401.1
YhgE/Pip-like protein; TIGRFAM: YhgE/Pip N-terminal domain; X-X-X-Leu-X-X-Gly heptad repeats; YhgE/Pip C-terminal domain.
 
    0.700
ACU85400.1
Predicted RND superfamily drug exporter; PFAM: MMPL family.
 
    0.623
ACU86822.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.531
ACU85398.1
Lysozyme M1 (1,4-beta-N-acetylmuramidase); PFAM: Glycosyl hydrolases family 25; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
       0.477
ACU85793.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.476
Your Current Organism:
Brachybacterium faecium
NCBI taxonomy Id: 446465
Other names: B. faecium DSM 4810, Brachybacterium faecium ATCC 43885, Brachybacterium faecium DSM 4810, Brachybacterium faecium str. DSM 4810, Brachybacterium faecium strain DSM 4810
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