STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_0067TIGRFAM: extracellular repeat protein, HAF family; KEGG: geo:Geob_2004 extracellular repeat protein, HAF family. (391 aa)    
Predicted Functional Partners:
Cfla_0068
TIGRFAM: extracellular repeat protein, HAF family; KEGG: geo:Geob_2004 extracellular repeat protein, HAF family.
 
    
0.651
Cfla_0066
Pyrrolo-quinoline quinone; KEGG: bcv:Bcav_2124 hypothetical protein; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
       0.584
Cfla_0065
KEGG: bcv:Bcav_2123 hypothetical protein.
       0.478
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.