STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_0866KEGG: pzu:PHZ_c1971 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR. (110 aa)    
Predicted Functional Partners:
Cfla_0864
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: nca:Noca_1276 activator of HSP90 ATPase 1 family protein.
 
    0.866
Cfla_1608
KEGG: rop:ROP_55970 putative ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
  
     0.766
Cfla_0865
KEGG: kra:Krad_1047 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.705
Cfla_0863
KEGG: dra:DR_1017 rRNA methylase; PFAM: tRNA/rRNA methyltransferase (SpoU); Thiostrepton-resistance methylase domain protein.
       0.488
Cfla_3346
KEGG: transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
  
     0.418
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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