STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_1105Cysteine desulfurase; KEGG: aminotransferase class V; PFAM: aminotransferase class V. (401 aa)    
Predicted Functional Partners:
Cfla_1676
KEGG: SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.
  
 0.978
Cfla_0492
UBA/THIF-type NAD/FAD binding protein; KEGG: rha:RHA1_ro06361 molybdopterin biosynthesis- like protein MoeZ; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein.
 
 
 0.976
mnmA
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
  
 0.933
Cfla_2083
KEGG: jde:Jden_1454 cysteine desulfurase; PFAM: aminotransferase class V.
  
  
 
0.926
Cfla_0454
KEGG: sma:SAV_1336 rhodanese family protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
   
 0.915
Cfla_2596
Rhodanese domain protein; KEGG: rop:ROP_54660 putative 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
   
 0.915
Cfla_1107
KEGG: hypothetical protein.
 
   
 0.867
Cfla_1108
KEGG: sco:SCO5401 integral membrane protein.
       0.783
Cfla_1109
KEGG: bcv:Bcav_0462 hypothetical protein.
       0.773
Cfla_1170
KEGG: jde:Jden_1702 2-isopropylmalate synthase/homocitrate synthase family protein; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
  
 0.758
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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