STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_1140KEGG: kse:Ksed_02470 hypothetical protein. (382 aa)    
Predicted Functional Partners:
Cfla_1139
KEGG: kse:Ksed_02460 hypothetical protein.
 
     0.955
Cfla_1137
KEGG: kse:Ksed_02440 coenzyme F390 synthetase.
 
     0.951
Cfla_1138
KEGG: kse:Ksed_02450 hypothetical protein.
       0.816
Cfla_1136
KEGG: nml:Namu_3118 hypothetical protein.
       0.757
Cfla_1982
KEGG: bcv:Bcav_2217 glutamate synthase (ferredoxin); PFAM: glutamate synthase; ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein.
     
 0.661
Cfla_1141
KEGG: sco:SCO4821 hypothetical protein.
       0.608
Cfla_3234
PFAM: Abortive infection protein; KEGG: bwe:BcerKBAB4_5653 abortive infection protein.
 
    0.602
Cfla_1135
KEGG: nml:Namu_3118 hypothetical protein.
       0.495
Cfla_0824
KEGG: bcv:Bcav_4115 hypothetical protein.
  
     0.485
Cfla_0168
KEGG: hypothetical protein.
 
    0.475
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.