STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_1191PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: aau:AAur_1535 oxidoreductase family protein. (383 aa)    
Predicted Functional Partners:
Cfla_1192
KEGG: ach:Achl_0067 hypothetical protein.
 
     0.947
Cfla_1190
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: oxidoreductase domain protein.
 
     0.895
Cfla_0182
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: art:Arth_0883 xylose isomerase domain- containing protein.
 
  
 0.727
Cfla_1189
PFAM: GCN5-related N-acetyltransferase; KEGG: ami:Amir_3298 GCN5-related N- acetyltransferase.
 
     0.666
Cfla_1193
KEGG: jde:Jden_1878 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
       0.548
lysS
TIGRFAM: lysyl-tRNA synthetase; KEGG: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.543
Cfla_0926
PFAM: Acetyl xylan esterase; KEGG: bcv:Bcav_1058 acetyl xylan esterase.
  
     0.530
Cfla_2382
KEGG: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.470
Cfla_2490
Galactokinase; KEGG: bcv:Bcav_2960 galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein; Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.449
Cfla_1194
PFAM: protein of unknown function DUF1680; KEGG: bfa:Bfae_11690 hypothetical protein.
       0.402
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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