STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_2342KEGG: hypothetical protein. (129 aa)    
Predicted Functional Partners:
Cfla_2341
KEGG: kra:Krad_3842 hypothetical protein.
       0.785
Cfla_2157
KEGG: hypothetical protein.
  
     0.736
Cfla_2340
KEGG: hypothetical protein.
       0.688
Cfla_2343
PFAM: protein of unknown function DUF1025; KEGG: hypothetical protein.
 
     0.660
Cfla_0564
KEGG: jde:Jden_0491 hypothetical protein.
   
    0.636
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
 
    0.575
Cfla_1728
KEGG: bcv:Bcav_1965 hypothetical protein.
  
     0.551
Cfla_2717
KEGG: bcv:Bcav_3230 geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase.
  
     0.509
Cfla_1701
KEGG: bcv:Bcav_1935 hypothetical protein.
  
     0.504
Cfla_2211
KEGG: hypothetical protein.
  
     0.487
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.