STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_2639TIGRFAM: conserved repeat domain protein; KEGG: fal:FRAAL6628 hypothetical protein. (743 aa)    
Predicted Functional Partners:
Cfla_0334
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
    0.742
Cfla_3570
KEGG: ami:Amir_3300 superoxide dismutase.
  
     0.698
Cfla_0338
KEGG: cai:Caci_4285 cellulose-binding family II; PFAM: cellulose-binding family II; SMART: cellulose-binding family II.
  
    0.652
Cfla_3610
KEGG: ami:Amir_3104 hypothetical protein.
  
     0.650
Cfla_2638
KEGG: cms:CMS_1002 hypothetical protein.
 
     0.646
Cfla_2792
PFAM: GCN5-related N-acetyltransferase; KEGG: ami:Amir_3549 GCN5-related N- acetyltransferase.
  
     0.640
Cfla_3140
PFAM: peptidase M48 Ste24p; KEGG: ami:Amir_0437 peptidase M48 Ste24p.
  
     0.555
Cfla_0091
PFAM: putative esterase; KEGG: cpi:Cpin_4242 putative esterase.
  
     0.548
Cfla_0383
KEGG: ami:Amir_3108 ricin B lectin; PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin.
  
 
   0.544
Cfla_2827
Hypothetical protein; KEGG: hut:Huta_1312 peptidase S26B, signal peptidase.
  
     0.536
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.