STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_2746KEGG: H(+)-transporting two-sector ATPase; PFAM: cation transporter. (457 aa)    
Predicted Functional Partners:
Cfla_2747
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: TrkA-N domain protein.
 
 
 0.992
Cfla_1707
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: TrkA-N domain protein.
  
 
 0.843
Cfla_1708
PFAM: TrkA-N domain protein; KEGG: TrkA-N domain protein.
  
 
 0.832
Cfla_2745
KEGG: kra:Krad_0611 histone deacetylase superfamily; PFAM: histone deacetylase superfamily.
   
   0.665
Cfla_2748
PFAM: protein of unknown function DUF344; KEGG: bcv:Bcav_1082 protein of unknown function DUF344.
       0.635
Cfla_1856
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: Fmu (Sun) domain protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.574
Cfla_0208
PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; Na+/H+ antiporter MnhB subunit-related protein; KEGG: NADH dehydrogenase (quinone).
     
 0.511
Cfla_2744
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: ace:Acel_0244 DNA binding domain-containing protein.
       0.440
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.406
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.406
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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