STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_2925KEGG: smd:Smed_2969 HemY domain-containing protein. (55 aa)    
Predicted Functional Partners:
Cfla_2926
PFAM: alpha/beta hydrolase fold; KEGG: kra:Krad_3547 alpha/beta hydrolase fold.
       0.608
Cfla_2927
KEGG: bfa:Bfae_15080 pyrimidine dimer DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase.
       0.608
Cfla_2924
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
       0.523
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.