STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_2994KEGG: rop:ROP_54270 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Cfla_2993
KEGG: rop:ROP_54270 hypothetical protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR.
       0.762
Cfla_2989
KEGG: cai:Caci_8697 hypothetical protein.
       0.522
Cfla_2990
KEGG: kra:Krad_4004 hypothetical protein.
       0.522
Cfla_2991
Hypothetical protein; KEGG: mms:mma_0841 UDP-N-acetylmuramate dehydrogenase.
       0.522
Cfla_2992
KEGG: sco:SCO4536 hypothetical protein.
       0.522
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.