STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_3460PFAM: penicillin-binding protein transpeptidase; KEGG: bcv:Bcav_0389 penicillin-binding protein transpeptidase. (659 aa)    
Predicted Functional Partners:
Cfla_3701
KEGG: bcv:Bcav_4182 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PASTA domain containing protein; SMART: PASTA domain containing protein.
 
 
 
 0.819
Cfla_3099
KEGG: bcv:Bcav_0604 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; PASTA domain containing protein; penicillin-binding protein transpeptidase; SMART: PASTA domain containing protein.
 
 
 
 0.738
Cfla_1595
KEGG: cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family.
 
 
 0.701
Cfla_0028
PFAM: cell cycle protein; KEGG: bcv:Bcav_0029 cell cycle protein; Belongs to the SEDS family.
  
 
 0.646
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
 
  
 0.639
Cfla_0623
KEGG:D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- al anine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
  
   
 0.632
Cfla_3459
PFAM: aldo/keto reductase; KEGG: aldo/keto reductase.
  
    0.619
Cfla_1597
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
 
 0.610
Cfla_2607
KEGG: kra:Krad_3802 hypothetical protein.
  
 
 0.610
Cfla_2063
Lytic transglycosylase catalytic; KEGG: rsa:RSal33209_2511 putative endopeptidase LytE precursor; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
 
 0.548
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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