STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cfla_3550KEGG: rha:RHA1_ro01446 anibiotic ABC transporter efflux pump. (549 aa)    
Predicted Functional Partners:
Cfla_3549
KEGG: bcv:Bcav_0537 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.955
Cfla_0251
KEGG: rer:RER_17880 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.810
Cfla_0567
KEGG: rop:ROP_11550 hypothetical membrane protein.
  
     0.774
Cfla_3548
PFAM: regulatory protein TetR; KEGG: bcv:Bcav_0538 transcriptional regulator, TetR family.
 
  
 0.748
Cfla_3547
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: tfu:Tfu_2791 xylanase; SMART: glycoside hydrolase family 10.
       0.402
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.