Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Cfla_0165 | Cfla_3571 | PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: bcv:Bcav_3861 protein of unknown function DUF404. | PFAM: transglutaminase domain protein; KEGG: sco:SCO1086 hypothetical protein. | 0.405 |
Cfla_3571 | Cfla_0165 | PFAM: transglutaminase domain protein; KEGG: sco:SCO1086 hypothetical protein. | PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: bcv:Bcav_3861 protein of unknown function DUF404. | 0.405 |
Cfla_3571 | Cfla_3572 | PFAM: transglutaminase domain protein; KEGG: sco:SCO1086 hypothetical protein. | PFAM: regulatory protein TetR; KEGG: bid:Bind_0033 TetR family transcriptional regulator. | 0.648 |
Cfla_3571 | Cfla_3573 | PFAM: transglutaminase domain protein; KEGG: sco:SCO1086 hypothetical protein. | PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ami:Amir_3334 short-chain dehydrogenase/reductase SDR. | 0.466 |
Cfla_3572 | Cfla_3571 | PFAM: regulatory protein TetR; KEGG: bid:Bind_0033 TetR family transcriptional regulator. | PFAM: transglutaminase domain protein; KEGG: sco:SCO1086 hypothetical protein. | 0.648 |
Cfla_3572 | Cfla_3573 | PFAM: regulatory protein TetR; KEGG: bid:Bind_0033 TetR family transcriptional regulator. | PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ami:Amir_3334 short-chain dehydrogenase/reductase SDR. | 0.748 |
Cfla_3573 | Cfla_3571 | PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ami:Amir_3334 short-chain dehydrogenase/reductase SDR. | PFAM: transglutaminase domain protein; KEGG: sco:SCO1086 hypothetical protein. | 0.466 |
Cfla_3573 | Cfla_3572 | PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ami:Amir_3334 short-chain dehydrogenase/reductase SDR. | PFAM: regulatory protein TetR; KEGG: bid:Bind_0033 TetR family transcriptional regulator. | 0.748 |