STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_0421Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR001347:IPR000281; KEGG: ami:Amir_2753 transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: C1YLY0 Transcriptional regulator; PFAM: SIS domain; Helix-turn-helix domain, rpiR family. (277 aa)    
Predicted Functional Partners:
Ndas_0420
Amidohydrolase; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR011059:IPR006680; KEGG: ami:Amir_2756 amidohydrolase; PFAM: amidohydrolase; SPTR: C1YLY1 Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase family.
 
    0.688
Ndas_0422
COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: nth:Nther_2710 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: C1YLX9 Na+/proline symporter; PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.679
Ndas_3479
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: sme:SMa0520 transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: C1YQ52 Transcriptional regulator; PFAM: Helix-turn-helix domain, rpiR family.
  
     0.656
Ndas_2372
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: sgr:SGR_3009 putative transcriptional regulator; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: C1YMF9 Transcriptional regulator; PFAM: SIS domain; Helix-turn-helix domain, rpiR family.
  
     0.487
Ndas_1926
Extracellular solute-binding protein family 1; COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR006059; KEGG: jan:Jann_3234 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1YTB8 Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein.
  
    0.437
Ndas_1000
Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: sen:SACE_4337 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR domain protein; SPTR: C1YTQ8 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
   
 0.415
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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