STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Ndas_1406Glycoside hydrolase 15-related protein; COGs: COG3387 Glucoamylase and related glycosyl hydrolase; InterPro IPR012341:IPR008928:IPR011613; KEGG: tfu:Tfu_1345 hypothetical protein; PFAM: glycoside hydrolase 15-related; SPTR: C1YRF3 Glycosyl hydrolase, glucoamylase; PFAM: Glycosyl hydrolases family 15. (601 aa)    
Predicted Functional Partners:
Ndas_4206
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); COGs: COG0380 Trehalose-6-phosphate synthase; InterPro IPR001830; KEGG: tfu:Tfu_0225 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20; PRIAM: Alpha,alpha-trehalose-phosphate synthase (UDP-forming); SPTR: C1YH06 Trehalose 6-phosphate synthase; PFAM: Glycosyltransferase family 20.
 
   
 0.779
Ndas_4211
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
   
 0.574
Ndas_0248
Trehalose synthase; COGs: COG0366 Glycosidase; InterProIPR006589:IPR012810:IPR006047:IPR013781:IPR 017853; KEGG: tfu:Tfu_0584 trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: C1YHF9 Trehalose synthase; TIGRFAM: trehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: trehalose synthase.
 
   
 0.508
Ndas_2267
Malto-oligosyltrehalose trehalohydrolase; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR004193:IPR006047:IPR012768:IPR013783:IPR 013781:IPR006589:IPR017853:IPR014756; KEGG: ami:Amir_5112 malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; SPTR: C1YV71 Maltooligosyl trehalose hydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: malto-oligos [...]
 
  
 0.501
Ndas_2269
COGs: COG3280 Maltooligosyl trehalose synthase; InterPro IPR012767:IPR006047:IPR013781:IPR017853; KEGG: ami:Amir_5113 malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SPTR: C1YV69 Maltooligosyl trehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: Alpha amylase, catalytic domain; TIGRFAM: malto-oligosyltrehalose synthase.
 
   
 0.488
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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