STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_1445Peptidase M20; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933; KEGG: sen:SACE_3209 hypothetical protein; PFAM: peptidase M20; SPTR: C1YJN5 Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40. (461 aa)    
Predicted Functional Partners:
Ndas_1448
KEGG: ami:Amir_3841 hypothetical protein; SPTR: C1YJC6 Putative uncharacterized protein.
 
    0.958
Ndas_1444
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: sen:SACE_3210 xylose isomerase domain-containing protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: A4FEL0 Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel.
 
     0.956
Ndas_1447
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683; KEGG: ami:Amir_3840 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: C1YJC7 Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
 
    0.936
Ndas_1446
COGs: COG2055 Malate/L-lactate dehydrogenase; InterPro IPR003767; KEGG: sen:SACE_3208 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; SPTR: C1YJN3 Malate/lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.933
Ndas_1449
Putative signal transduction protein with EFhand domain; InterProIPR002048:IPR018247:IPR018248:IPR018249:IPR 011992; KEGG: ami:Amir_3842 putative signal transduction protein with EFhand domain; PFAM: EF-Hand domain; SPTR: C1YJC5 Putative calcium-binding protein.
 
   
 0.867
Ndas_1455
COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: sen:SACE_3216 long-chain acyl-CoA synthetase, putative; PFAM: AMP-dependent synthetase and ligase; SPTR: C1YJB9 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme.
 
   0.826
Ndas_1443
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR004104; KEGG: ami:Amir_3836 oxidoreductase domain protein; PFAM: Oxidoreductase domain; SPTR: C1YJC8 Putative uncharacterized protein.
  
    0.824
Ndas_1450
Putative signal transduction protein with EFhand domain; InterProIPR018247:IPR018249:IPR011992:IPR002048:IPR 018248; KEGG: ami:Amir_3842 putative signal transduction protein with EFhand domain; PFAM: EF-Hand domain; SPTR: C1YJC4 Ca2+-binding protein (EF-Hand superfamily).
 
   
 0.821
Ndas_1454
Amine oxidase; COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR002937:IPR003042; KEGG: sen:SACE_3215 hypothetical protein; PFAM: amine oxidase; SPTR: C1YJC0 Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase.
 
     0.820
Ndas_2535
KEGG: sro:Sros_8945 hypothetical protein; SPTR: C1YWE7 Putative uncharacterized protein.
  
     0.583
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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