STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Ndas_1654Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR011051:IPR020449:IPR000005:IPR018060:IPR 003313:IPR009057; KEGG: rer:RER_34570 AraC family transcriptional regulator; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C1YJI5 DNA-binding domain-containing protein, AraC-type; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (255 aa)    
Predicted Functional Partners:
Ndas_1655
Protein of unknown function DUF81; InterPro IPR002781; KEGG: rer:RER_34580 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: C1YJI4 Predicted permease; PFAM: Sulfite exporter TauE/SafE.
 
     0.832
Ndas_4292
Transmembrane pair domain protein; COGs: COG4125 membrane protein; InterPro IPR007896; KEGG: pfo:Pfl01_4339 transmembrane pair; PFAM: transmembrane pair domain protein; SPTR: C1YGW9 Predicted membrane protein, COG4125; PFAM: Bacterial Transmembrane Pair family.
  
     0.502
Ndas_2039
Transcriptional regulator, XRE family; InterPro IPR011051:IPR001387:IPR014710:IPR013096; KEGG: reu:Reut_B5130 helix-hairpin-helix DNA-binding motif-containing protein; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; SPTR: C1YMY9 Predicted transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
 
 
 0.449
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.437
Ndas_2384
Transcriptional regulator, ArgP, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR017685:IPR005119:IPR011991; KEGG: aau:AAur_1007 chromosome replication initiation inhibitor protein; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YME7 Transcriptional regulator, LysR family; TIGRFAM: transcriptional regulator, ArgP family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; TIGRFAM: transcriptional regulator, ArgP family.
  
    0.435
Ndas_2466
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterProIPR018062:IPR018060:IPR011051:IPR009057:IPR 013096:IPR000005; KEGG: rer:RER_03150 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; SPTR: C1YM65 DNA-binding domain-containing protein, AraC-type; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
 
  
0.422
Ndas_1592
COGs: COG2375 Siderophore-interacting protein; InterPro IPR017927:IPR013113:IPR007037; KEGG: rer:RER_17020 siderophore-interacting protein; PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; SPTR: C1YJQ4 Siderophore-interacting protein; PFAM: Siderophore-interacting protein; Siderophore-interacting FAD-binding domain.
  
  
 0.419
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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