STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_1663Endoribonuclease L-PSP; COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR013813:IPR006175; KEGG: rha:RHA1_ro01781 endoribonuclease; PFAM: Endoribonuclease L-PSP; SPTR: C1YJH6 Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP. (140 aa)    
Predicted Functional Partners:
Ndas_1664
FAD dependent oxidoreductase; COGs: COG2072 flavoprotein involved in K+ transport; InterPro IPR013027:IPR006076; KEGG: aau:AAur_0571 putative flavin-binding monooxygenase-like; PFAM: FAD dependent oxidoreductase; SPTR: C1YJH5 Predicted flavoprotein involved in K+ transport; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
    0.984
Ndas_1662
Protein of unknown function DUF1028; COGs: COG3342 conserved hypothetical protein; InterPro IPR010430; KEGG: aau:AAur_0574 hypothetical protein; PFAM: protein of unknown function DUF1028; SPTR: C1YJH7 Uncharacterized conserved protein; PFAM: Family of unknown function (DUF1028).
 
     0.948
Ndas_1661
Amidohydrolase; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR017144:IPR011650:IPR010168:IPR002933; KEGG: aau:AAur_0573 putative amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: C1YJH8 Amidohydrolase; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; Belongs to the peptidase M20A family.
 
   
 0.849
Ndas_2646
Protein of unknown function DUF1028; COGs: COG3342 conserved hypothetical protein; InterPro IPR010430; KEGG: ddr:Deide_3p02220 hypothetical protein; PFAM: protein of unknown function DUF1028; SPTR: C1YKK6 Uncharacterized conserved protein; PFAM: Family of unknown function (DUF1028).
 
     0.702
Ndas_1666
Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: mjl:Mjls_2639 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YJH3 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain.
 
     0.662
Ndas_2099
Endoribonuclease L-PSP; COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR013813:IPR006175; KEGG: sen:SACE_3661 ribonuclease; PFAM: Endoribonuclease L-PSP; SPTR: C1YMS8 Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP.
  
     0.568
Ndas_1665
Major facilitator superfamily MFS_1; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR005829:IPR011701:IPR016196; KEGG: cgt:cgR_0768 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1YJH4 Nitrate/nitrite transporter; PFAM: Major Facilitator Superfamily.
       0.497
Ndas_0234
Endoribonuclease L-PSP; COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR013813:IPR006175; KEGG: tfu:Tfu_0673 hypothetical protein; PFAM: Endoribonuclease L-PSP; SPTR: C1YHP4 Putative translation initiation inhibitor, yjgF family; PFAM: Endoribonuclease L-PSP.
  
     0.472
Ndas_0290
Small GTP-binding protein; COGs: COG0480 Translation elongation factors (GTPase); InterProIPR020568:IPR005517:IPR000640:IPR005225:IPR 009000:IPR014721:IPR009022:IPR000795; KEGG: tcu:Tcur_2099 small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor G domain protein; SMART: elongation factor G domain IV; elongation factor G domain protein; SPTR: C1YHB7 Translation elongation factor 2 (EF-2/EF-G); TIGRFAM: small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP [...]
    
  0.421
Ndas_2639
Hypothetical protein; InterPro IPR020568:IPR014721; KEGG: sma:SAV_1799 elongation factor G; SPTR: C1YVJ0 Putative uncharacterized protein; PFAM: Elongation factor G, domain IV.
    
  0.421
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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