STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_1834LigA; KEGG: ade:Adeh_0244 LigA; SPTR: Q2IMJ3 LigA. (101 aa)    
Predicted Functional Partners:
Ndas_1833
UspA domain protein; InterPro IPR014729:IPR006016:IPR006015; KEGG: tfu:Tfu_3041 putative stress-inducible protein; PFAM: UspA domain protein; SPTR: C1YNP8 Universal stress protein UspA-like protein; PFAM: Universal stress protein family.
       0.519
Ndas_1835
Major facilitator superfamily MFS_1; InterPro IPR016196:IPR011701:IPR020827; KEGG: saq:Sare_2211 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1YNP7 Sugar phosphate permease; PFAM: Major Facilitator Superfamily.
       0.429
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.