STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_2158Protein of unknown function DUF2000; InterPro IPR017021:IPR018988; KEGG: vfi:VF_1078 hypothetical protein; PFAM: Protein of unknown function DUF2000; SPTR: C1YML9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2000). (136 aa)    
Predicted Functional Partners:
Ndas_2159
Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR019887:IPR011991:IPR000485:IPR019888:IPR 011008; KEGG: cai:Caci_4349 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: C1YML8 Transcriptional regulator; PFAM: AsnC family.
 
     0.689
Ndas_2160
KEGG: mba:Mbar_A2719 hypothetical protein; SPTR: C1YML7 Putative uncharacterized protein.
       0.408
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.