STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_2560DNA binding domain protein, excisionase family; InterProIPR008995:IPR005116:IPR000551:IPR009061:IPR 010093; KEGG: tcu:Tcur_2823 DNA binding domain protein, excisionase family; PFAM: TOBE domain protein; regulatory protein MerR; SPTR: C1YT88 DNA-binding protein, excisionase family; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: MerR family regulatory protein; TOBE domain; TIGRFAM: molybdenum-pterin binding domain; DNA binding domain, excisionase family. (133 aa)    
Predicted Functional Partners:
Ndas_2559
Molybdenum ABC transporter, periplasmic molybdate-binding protein; COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR005950:IPR006059; KEGG: tfu:Tfu_0328 molybdenum ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1YT89 Molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein.
 
  
 0.942
Ndas_2558
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
     0.863
Ndas_2557
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR008995:IPR003439:IPR017871:IPR003593:IPR 005116; KEGG: tfu:Tfu_0326 ABC-type spermidine/putrescine transport systems ATPase components; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; SPTR: C1YT91 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain.
 
 
 
 0.851
tatA
Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
   
 0.551
moaC
Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.
 
   
 0.514
Ndas_3825
UBA/THIF-type NAD/FAD binding protein; COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterProIPR009036:IPR001763:IPR000594:IPR007901:IPR 016040; KEGG: tfu:Tfu_0520 molybdopterin biosynthesis-like protein MoeZ; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C1YL25 Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: MoeZ/MoeB domain; Rhodanese-like domain; ThiF family.
 
  
 0.506
Ndas_1912
Binding-protein-dependent transport systems inner membrane component; COGs: COG0555 ABC-type sulfate transport system permease component; InterPro IPR000515; KEGG: bpr:GBP346_A1438 ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YTE0 ABC-type sulfate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  
 0.482
crgA
Protein of unknown function UPF0233; Involved in cell division; Belongs to the CrgA family.
  
     0.482
Ndas_3798
Molybdopterin biosynthesis MoaE protein; COGs: COG0314 Molybdopterin converting factor large subunit; InterPro IPR003448; KEGG: tfu:Tfu_0538 molybdopterin synthase subunit MoaE; PFAM: molybdopterin biosynthesis MoaE protein; SPTR: C1YL55 Molybdopterin synthase subunit MoaE; PFAM: MoaE protein.
 
   
 0.466
pheT
COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterProIPR005121:IPR005146:IPR002547:IPR005147:IPR 004532:IPR020825:IPR012340:IPR016027:IPR009061; KEGG: tfu:Tfu_2060 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/4 domain protein; tRNA synthetase B5; t-RNA-binding domain protein; ferredoxin-fold anticodon-binding; PRIAM: Phenylalanine--tRNA ligase; SMART: B3/4 domain protein; ferredoxin-fold anticodon-binding; tRNA synthetase B5; SPTR: C1YVE0 Phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B [...]
       0.437
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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