STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_2942Alpha-N-arabinofuranosidase; InterPro IPR000772:IPR008997:IPR005193; KEGG: ami:Amir_4966 alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 62; Ricin B lectin; PRIAM: Alpha-N-arabinofuranosidase; SMART: Ricin B lectin; SPTR: C1YS01 Glycosyl hydrolase family 62; PFAM: Ricin-type beta-trefoil lectin domain; Glycosyl hydrolase family 62. (474 aa)    
Predicted Functional Partners:
Ndas_2218
Endo-1,4-beta-xylanase; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR001000:IPR013781:IPR017853; KEGG: tfu:Tfu_2923 xylanase; PFAM: glycoside hydrolase family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10; SPTR: C1YTX4 Beta-1,4-xylanase; PFAM: Glycosyl hydrolase family 10.
 
 0.953
Ndas_3986
Endo-1,4-beta-xylanase; COGs: COG3693 Beta-1 4-xylanase; InterPro IPR013781:IPR001000:IPR017853; KEGG: tfu:Tfu_2791 xylanase; PFAM: glycoside hydrolase family 10; PRIAM: Endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10; SPTR: C1YKL3 Beta-1,4-xylanase (Fragment); PFAM: Glycosyl hydrolase family 10.
   0.930
Ndas_2447
Glycoside hydrolase family 10; COGs: COG3693 Beta-1 4-xylanase; InterProIPR001000:IPR012291:IPR001919:IPR013781:IPR 017909:IPR008965:IPR017853; KEGG: tfu:Tfu_2923 xylanase; PFAM: glycoside hydrolase family 10; cellulose-binding family II; SMART: glycoside hydrolase family 10; cellulose-binding family II; SPTR: C1YM84 Endo-1,4-beta-xylanase (Glycosyl hydrolase family 10); PFAM: Cellulose binding domain; Glycosyl hydrolase family 10.
 
 0.914
Ndas_2245
Esterase, PHB depolymerase family; COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; InterPro IPR010126:IPR001919:IPR012291:IPR008965; KEGG: ami:Amir_3959 esterase, PHB depolymerase family; PFAM: cellulose-binding family II; Esterase PHB depolymerase; SMART: cellulose-binding family II; SPTR: C1YV93 Esterase, PHB depolymerase family; TIGRFAM: esterase, PHB depolymerase family; PFAM: Cellulose binding domain; Esterase PHB depolymerase; TIGRFAM: esterase, PHB depolymerase family.
 
 
   0.837
Ndas_1746
Amino acid adenylation domain protein; COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterProIPR020845:IPR009081:IPR001242:IPR000873:IPR 010071:IPR006163; KEGG: sco:SCO3230 CDA peptide synthetase I; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; SPTR: C1YNY7 Amino acid adenylation enzyme/thioester reductase family protein; TIGRFAM: amino acid adenylation domain protein; PFAM: Phosphopantetheine attachment site; Condensation domain; AMP-binding enzyme; TIGRFAM: amino acid adenylation domain.
  
  
 0.821
Ndas_1741
Amino acid adenylation domain protein; COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterProIPR009081:IPR020845:IPR010071:IPR001242:IPR 000873:IPR006163:IPR001031; KEGG: sen:SACE_4287 putative non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase; SPTR: C1YNZ2 Amino acid adenylation enzyme/thioester reductase family protein; TIGRFAM: amino acid adenylation domain protein; PFAM: Phosphopantetheine attachment site; Thioesterase domain; AMP-binding enzyme; Condensati [...]
  
  
 0.819
Ndas_1027
Isochorismatase; COGs: COG1535 Isochorismate hydrolase; InterPro IPR000868:IPR016291:IPR003881; KEGG: gym:GYMC10_4574 isochorismatase; PFAM: isochorismatase hydrolase; PRIAM: Isochorismatase; SPTR: C1YVN2 Isochorismate hydrolase; PFAM: Isochorismatase family.
  
  
 0.817
Ndas_0496
Acyl transferase; COGs: COG3321 Polyketide synthase modules and related protein; InterProIPR009081:IPR006162:IPR018201:IPR000408:IPR 016038:IPR001227:IPR016040:IPR016039:IPR016035:IPR016036:I PR014030:IPR014031:IPR014043:IPR002198:IPR006163:IPR001031 ; KEGG: sgr:SGR_6183 putative type-I PKS; PFAM: Acyl transferase; Beta-ketoacyl synthase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Thioesterase; SPTR: C1YLQ3 Short chain dehydrogenase/acyltransferase/thioesterase; PFAM: Thioesterase domain; Phosphopantetheine attachment site; Acyl transferase domain; KR domain; [...]
 
  
 0.782
Ndas_2710
Endo-1,4-beta-xylanase; InterProIPR018208:IPR012291:IPR001137:IPR001919:IPR 013319:IPR008985:IPR008965; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; cellulose-binding family II; PRIAM: Endo-1,4-beta-xylanase; SMART: cellulose-binding family II; SPTR: C1YKE1 Endo-1,4-beta-xylanase; PFAM: Glycosyl hydrolases family 11; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.773
Ndas_0923
Cellulose-binding family II; InterProIPR001919:IPR013517:IPR008965:IPR017909:IPR 012291; KEGG: ami:Amir_1868 cellulose-binding family II; PFAM: cellulose-binding family II; FG-GAP repeat protein; SMART: cellulose-binding family II; SPTR: C1YQH4 Cellulose binding protein with FG-GAP repeat; PFAM: Cellulose binding domain.
 
     0.762
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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