STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_3203Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: tfu:Tfu_0422 BadM/Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: C1YSU4 Rrf2 family protein, putative transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator). (143 aa)    
Predicted Functional Partners:
Ndas_3202
Oxidoreductase FAD-binding domain protein; COGs: COG1017 Hemoglobin-like flavoprotein; InterProIPR008333:IPR017938:IPR017927:IPR000971:IPR 000951:IPR001433:IPR012292:IPR009050; KEGG: tfu:Tfu_0423 flavohemoprotein; PFAM: Oxidoreductase FAD-binding domain protein; globin; oxidoreductase FAD/NAD(P)-binding domain protein; SPTR: C1YSU5 Hemoglobin-like flavoprotein; PFAM: Oxidoreductase FAD-binding domain; Globin.
 
   
 0.909
Ndas_3204
Drug resistance transporter, EmrB/QacA subfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR001411:IPR016196:IPR004638; KEGG: tcu:Tcur_3112 drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; SPTR: C1YSU3 Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
       0.697
Ndas_3781
Aminotransferase class V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterProIPR015424:IPR015422:IPR016454:IPR000192:IPR 015421; KEGG: tfu:Tfu_0595 putative pyridoxal-phosphate-dependent aminotransferase; PFAM: aminotransferase class V; SPTR: C1YL72 Cysteine desulfurase family protein; PFAM: Aminotransferase class-V.
  
  
 0.672
Ndas_2958
SUF system FeS assembly protein, NifU family; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR011341:IPR002871; KEGG: tfu:Tfu_1982 SUF system FeS assembly protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: C1YRY5 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family.
  
  
 0.574
Ndas_2477
phenylacetate-CoA oxygenase/reductase, PaaK subunit; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterProIPR006058:IPR001041:IPR017927:IPR001221:IPR 001709:IPR017938:IPR011884:IPR008333:IPR001433:IPR012675; KEGG: sen:SACE_3548 putative phenylacetic acid degradation NADH oxidoreductase; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; SPTR: C1YM54 Phenylacetate-CoA oxygenase/reductase, PaaK subunit; TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: 2Fe-2S iron-sulfur cluster bin [...]
  
  
 0.416
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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