STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ndas_3207NADPH-dependent F420 reductase; COGs: COG2085 dinucleotide-binding protein; InterPro IPR016040:IPR004455:IPR010185; KEGG: tfu:Tfu_0970 reduced coenzyme F420:NADP oxidoreductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; SPTR: C1YSU0 Reduced coenzyme F420:NADP oxidoreductase; TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: NADPH-dependent F420 reductase. (231 aa)    
Predicted Functional Partners:
Ndas_3208
KEGG: tcu:Tcur_3117 hypothetical protein; SPTR: C1YST9 Putative uncharacterized protein.
 
     0.716
Ndas_3768
F420 biosynthesis protein FbiB, C-terminal domain protein; COGs: COG1478 conserved hypothetical protein; InterPro IPR000415:IPR008225:IPR019943:IPR002847; KEGG: tfu:Tfu_2518 F420-0--gamma-glutamyl ligase; PFAM: protein of unknown function DUF129; nitroreductase; SPTR: C1YL84 Coenzyme F420-0 gamma-glutamyl ligase; TIGRFAM: F420 biosynthesis protein FbiB, C-terminal domain; F420-dependent oxidoreductase; PFAM: F420-0:Gamma-glutamyl ligase; Nitroreductase family; TIGRFAM: F420 biosynthesis protein FbiB, C-terminal domain; F420-0:gamma-glutamyl ligase.
 
     0.563
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.461
Ndas_3767
LPPG domain protein containing protein; COGs: COG0391 conserved hypothetical protein; InterPro IPR010115:IPR002882; KEGG: tfu:Tfu_2517 LPPG:FO 2-phospho-L-lactate transferase; PFAM: protein of unknown function UPF0052 and CofD; SPTR: C1YL85 LPPG:FO 2-phospho-L-lactate transferase; TIGRFAM: LPPG domain protein containing protein; PFAM: Uncharacterised protein family UPF0052; TIGRFAM: LPPG:FO 2-phospho-L-lactate transferase.
 
     0.456
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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