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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_3208KEGG: tcu:Tcur_3117 hypothetical protein; SPTR: C1YST9 Putative uncharacterized protein. (63 aa)    
Predicted Functional Partners:
Ndas_3207
NADPH-dependent F420 reductase; COGs: COG2085 dinucleotide-binding protein; InterPro IPR016040:IPR004455:IPR010185; KEGG: tfu:Tfu_0970 reduced coenzyme F420:NADP oxidoreductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; SPTR: C1YSU0 Reduced coenzyme F420:NADP oxidoreductase; TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: NADPH-dependent F420 reductase.
 
     0.717
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.623
Ndas_4831
KEGG: tfu:Tfu_0025 hypothetical protein; SPTR: C1YRD0 Putative uncharacterized protein.
  
     0.504
Ndas_5098
InterPro IPR013494; KEGG: tfu:Tfu_2670 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C1YI67 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2398); TIGRFAM: conserved hypothetical protein TIGR02678.
  
     0.452
Ndas_3726
Haloacid dehalogenase domain protein hydrolase; COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: tfu:Tfu_2482 phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1YLC5 Predicted phosphatase.
  
     0.424
Ndas_4368
Bifunctional DNA primase/polymerase; InterPro IPR015330; KEGG: tfu:Tfu_2729 hypothetical protein; PFAM: Bifunctional DNA primase/polymerase; SPTR: C1YGP2 Bifunctional DNA primase/polymerase famiily protein; PFAM: Bifunctional DNA primase/polymerase, N-terminal.
  
     0.403
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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