STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_3471Metallophosphoesterase; InterPro IPR004843; KEGG: svi:Svir_20990 calcineurin-like phosphoesterase; PFAM: metallophosphoesterase; SPTR: C1YQ63 Calcineurin-like phosphoesterase; PFAM: Calcineurin-like phosphoesterase. (607 aa)    
Predicted Functional Partners:
Ndas_1339
Transcriptional regulator, TetR family; InterProIPR001387:IPR001647:IPR012287:IPR009057:IPR 010982:IPR011075; KEGG: sen:SACE_3864 TetR family transcriptional regulator; PFAM: regulatory protein TetR; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: C1YRM1 Transcriptional regulator, COG1309; PFAM: Helix-turn-helix; Bacterial regulatory proteins, tetR family.
  
     0.479
Ndas_0852
KEGG: sen:SACE_4220 hypothetical protein; SPTR: C1YQP5 Putative uncharacterized protein.
  
 
 
 0.465
Ndas_5202
GAF sensor hybrid histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterProIPR009082:IPR003660:IPR001789:IPR003594:IPR 003661:IPR005467:IPR011006:IPR003018:IPR004358; KEGG: tfu:Tfu_0286 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; GAF domain pro [...]
  
  
 0.427
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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