STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_3503YD repeat protein; InterPro IPR006530; KEGG: sro:Sros_7436 rhs family protein-like protein; PFAM: YD repeat-containing protein; SPTR: C1YQ28 Rhs family protein; TIGRFAM: YD repeat protein; PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies). (2145 aa)    
Predicted Functional Partners:
Ndas_3504
InterPro IPR008985; KEGG: sro:Sros_7437 hypothetical protein; SPTR: C1YQ27 Putative uncharacterized protein.
  
 0.867
Ndas_2475
InterPro IPR008985; KEGG: sro:Sros_7437 hypothetical protein; SPTR: C1YM56 Putative uncharacterized protein.
  
 0.709
Ndas_0562
KEGG: sro:Sros_7437 hypothetical protein; SPTR: C1YLI9 Putative uncharacterized protein.
 
  
 0.681
Ndas_2872
Peptidase M64, IgA; InterPro IPR019026; KEGG: sro:Sros_2018 hypothetical protein; PFAM: Peptidase M64, IgA; SPTR: C1YJX4 IgA Peptidase M64; PFAM: IgA Peptidase M64.
  
     0.597
Ndas_1536
ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG0474 Cation transport ATPase; InterProIPR001757:IPR000695:IPR018303:IPR008250:IPR 005834; KEGG: tfu:Tfu_1834 ATPase, E1-E2 type; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: C1YJ47 P-type ATPase, translocating; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC.
   
  
 0.550
Ndas_4133
KEGG: sro:Sros_9307 hypothetical protein; SPTR: C1YG52 Putative uncharacterized protein.
  
     0.548
Ndas_1209
Secretion protein snm4; InterPro IPR006707; KEGG: sen:SACE_5517 integral membrane protein; PFAM: protein of unknown function DUF571; SPTR: C1YTJ1 Secretion protein snm4; TIGRFAM: secretion protein snm4; PFAM: Protein of unknown function (DUF571); TIGRFAM: secretion protein snm4.
   
    0.539
Ndas_4617
Secretion protein snm4; InterPro IPR006707; KEGG: sma:SAV_5440 hypothetical protein; PFAM: protein of unknown function DUF571; SPTR: C1YGK5 Secretion protein snm4; TIGRFAM: secretion protein snm4; PFAM: Protein of unknown function (DUF571); TIGRFAM: secretion protein snm4.
   
    0.539
Ndas_5431
Protein of unknown function DUF571; InterPro IPR006707; KEGG: saq:Sare_4752 hypothetical protein; PFAM: protein of unknown function DUF571; SPTR: C1YQ02 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF571); TIGRFAM: secretion protein snm4.
   
    0.539
Ndas_3507
Alpha-1,2-mannosidase; COGs: COG3537 Putative alpha-1 2-mannosidase; InterPro IPR005887:IPR012939; KEGG: sma:SAV_2253 hypothetical protein; PFAM: glycosyl hydrolase 92; SPTR: C1YQ23 Alpha-1,2-mannosidase, putative; TIGRFAM: alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative.
  
     0.482
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.