STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Ndas_3814Binding-protein-dependent transport systems inner membrane component; COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: sgr:SGR_4696 putative ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YL39 ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component. (265 aa)    
Predicted Functional Partners:
Ndas_3816
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR008995:IPR003439:IPR013611:IPR017871:IPR 003593; KEGG: sgr:SGR_4694 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1YL37 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT.
 
 
 0.994
Ndas_3813
Extracellular solute-binding protein family 1; COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR006059; KEGG: sgr:SGR_4697 putative ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1YL40 ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein; ABC transporter periplasmic binding protein, thiB subfamily.
 
 
  0.985
Ndas_3815
2-aminoethylphosphonate ABC transporter, permease protein; COGs: COG0555 ABC-type sulfate transport system permease component; InterPro IPR017636:IPR000515; KEGG: sgr:SGR_4695 putative ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YL38 2-aminoethylphosphonate ABC transporter, permease protein; TIGRFAM: 2-aminoethylphosphonate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: 2-aminoethylphosphonate ABC transporter, permease protein.
 
  
 
0.969
Ndas_1922
Binding-protein-dependent transport systems inner membrane component; COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: efa:EF1218 spermidine/putrescine ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YTC2 ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.926
Ndas_1926
Extracellular solute-binding protein family 1; COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR006059; KEGG: jan:Jann_3234 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: C1YTB8 Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein.
 
  
 0.870
Ndas_3818
FAD dependent oxidoreductase TIGR03364; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR017741:IPR006076; KEGG: sgr:SGR_4692 putative oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: C1YL35 FAD dependent oxidoreductase TIGR03364; TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; TIGRFAM: FAD dependent oxidoreductase TIGR03364.
 
     0.856
Ndas_3817
HAD-superfamily hydrolase, subfamily IA, variant 3; COGs: COG0546 phosphatase; InterPro IPR006439:IPR006402:IPR005834; KEGG: sgr:SGR_4693 putative hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: C1YL36 Phosphonatase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif ha [...]
 
     0.820
Ndas_1925
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR017871:IPR013611:IPR008995:IPR003593:IPR 003439; KEGG: cai:Caci_7452 spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1YTB9 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain.
 
  
 0.817
Ndas_1910
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR013611:IPR017871:IPR003593; KEGG: ttj:TTHA0975 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1YTE2 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
 
  
 0.757
Ndas_2557
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterProIPR008995:IPR003439:IPR017871:IPR003593:IPR 005116; KEGG: tfu:Tfu_0326 ABC-type spermidine/putrescine transport systems ATPase components; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; SPTR: C1YT91 ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain.
 
  
 0.698
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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