STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_3889Putative sigma E regulatory protein, MucB/RseB; KEGG: tfu:Tfu_0506 hypothetical protein; SPTR: C1YKW1 Putative uncharacterized protein. (360 aa)    
Predicted Functional Partners:
Ndas_3890
KEGG: tfu:Tfu_0505 hypothetical protein; SPTR: C1YKW0 Putative uncharacterized protein.
 
     0.937
Ndas_3891
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR014284:IPR007627:IPR 013249; KEGG: tfu:Tfu_0504 RNA polymerase sigma factor SigE; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YKV9 RNA polymerase, sigma 29 subunit, SigE; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.845
Ndas_1474
Tetratricopeptide TPR_4; InterPro IPR011990:IPR019734:IPR011717:IPR013026; KEGG: tfu:Tfu_1399 hypothetical protein; PFAM: Tetratricopeptide TPR_4; SPTR: C1YJG8 Tetratricopeptide repeat protein.
  
     0.742
Ndas_3126
KEGG: tfu:Tfu_1035 hypothetical protein; SPTR: C1YW54 Putative uncharacterized protein.
  
     0.732
Ndas_3766
KEGG: tfu:Tfu_2516 hypothetical protein; SPTR: Q47LX3 Putative uncharacterized protein.
  
     0.714
Ndas_5484
KEGG: tfu:Tfu_0192 hypothetical protein; SPTR: C1YPU8 Putative uncharacterized protein.
  
     0.711
Ndas_3953
KEGG: tfu:Tfu_2562 hypothetical protein; SPTR: C1YKP7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2581).
  
     0.690
Ndas_0156
KEGG: tfu:Tfu_0596 hypothetical protein; SPTR: C1YHH5 Putative uncharacterized protein; PFAM: Family of unknown function (DUF695).
  
     0.684
Ndas_3961
Hypothetical protein; KEGG: tfu:Tfu_2569 putative integral membrane protein; SPTR: C1YKN8 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3017).
  
     0.644
Ndas_1297
KEGG: tfu:Tfu_2295 hypothetical protein; SPTR: C1YRR0 Putative uncharacterized protein.
  
     0.635
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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