STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_3917KEGG: sen:SACE_3355 hypothetical protein; SPTR: C1YKT4 Putative uncharacterized protein. (404 aa)    
Predicted Functional Partners:
Ndas_3918
InterPro IPR010985; KEGG: nml:Namu_1862 CopG domain protein DNA-binding domain protein; SPTR: C1YKT3 Putative uncharacterized protein; PFAM: Arc-like DNA binding domain.
       0.773
Ndas_3919
Death-on-curing family protein; COGs: COG3654 Prophage maintenance system killer protein; InterPro IPR006440:IPR003812; KEGG: sro:Sros_6570 death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; SPTR: C1YKT2 Death-on-curing family protein; TIGRFAM: death-on-curing family protein; PFAM: Fic/DOC family; TIGRFAM: death-on-curing family protein.
       0.773
Ndas_1882
KEGG: bcv:Bcav_4130 hypothetical protein; SPTR: C1YTG8 Putative uncharacterized protein.
  
     0.539
Ndas_3920
KEGG: nml:Namu_1862 CopG domain protein DNA-binding domain protein; SPTR: C1YKT1 Putative uncharacterized protein.
       0.532
Ndas_3916
InterPro IPR016181; KEGG: mav:MAV_5171 acetyltransferase, GNAT family protein; SPTR: C1YKT5 Putative uncharacterized protein.
 
     0.523
Ndas_1327
Transcriptional regulator, TetR family; InterPro IPR001647:IPR012287:IPR009057; KEGG: sen:SACE_6254 hypothetical protein; PFAM: regulatory protein TetR; SPTR: C1YRN2 Transcriptional regulator, tetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.461
Ndas_2655
Methyltransferase type 12; InterPro IPR013217; KEGG: rer:RER_11930 methyltransferase; PFAM: Methyltransferase type 12; SPTR: C1YKJ7 Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.441
Ndas_1006
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: bfa:Bfae_17930 predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold; SPTR: C1YTQ2 Predicted hydrolase or acyltransferase of alpha/beta superfamily.
  
     0.439
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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