STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_4107Protein of unknown function DUF2087; InterPro IPR018656; KEGG: sgr:SGR_509 hypothetical protein; PFAM: Protein of unknown function DUF2087; SPTR: C1YSE8 Uncharacterized conserved protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2087). (165 aa)    
Predicted Functional Partners:
Ndas_4106
HAD-superfamily hydrolase, subfamily IIB; COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR006379:IPR013200; KEGG: sma:SAV_4256 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: C1YSE9 HAD-superfamily hydrolase, subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB.
       0.568
Ndas_4104
COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR010723; KEGG: tfu:Tfu_0739 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; PRIAM: Coproporphyrinogen dehydrogenase; SMART: Elongator protein 3/MiaB/NifB; SPTR: C1YSF2 Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM superfamily; HemN C-terminal region.
 
     0.540
Ndas_4105
KEGG: tfu:Tfu_0740 hypothetical protein; SPTR: C1YSF1 Putative uncharacterized protein.
  
    0.484
Ndas_4101
KEGG: tfu:Tfu_0736 hypothetical protein; SPTR: C1YSF5 Putative uncharacterized protein.
       0.471
Ndas_4102
InterPro IPR011761; KEGG: tfu:Tfu_0737 hypothetical protein; SPTR: C1YSF4 Glutathione synthase/ribosomal protein S6 modification enzyme (Glutaminyl transferase).
       0.471
Ndas_4103
Conserved hypothetical protein; InterPro IPR017850:IPR017849; KEGG: tfu:Tfu_0738 hypothetical protein; SPTR: C1YSF3 Putative uncharacterized protein; PFAM: Sulfatase.
       0.471
Ndas_2063
KEGG: sro:Sros_1505 hypothetical protein; SPTR: C1YMW5 Putative uncharacterized protein.
  
     0.407
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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