STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_4287Transcriptional regulator, TetR family; InterPro IPR001647:IPR009057:IPR012287; KEGG: kra:Krad_1571 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C1YGX4 Transcriptional regulator, COG1309; PFAM: Bacterial regulatory proteins, tetR family. (205 aa)    
Predicted Functional Partners:
Ndas_2145
Regulatory protein TetR; InterPro IPR001647:IPR012287:IPR009057; KEGG: ami:Amir_6201 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C1YMN2 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.619
Ndas_4286
NAD(P)H dehydrogenase (quinone); COGs: COG1182 Acyl carrier protein phosphodiesterase; InterPro IPR003680; KEGG: fal:FRAAL1130 putative acyl carrier protein phosphodiesterase (ACP phosphodiesterase); PFAM: NAD(P)H dehydrogenase (quinone); SPTR: C1YGX5 Acyl carrier protein phosphodiesterase; PFAM: Flavodoxin-like fold.
       0.539
Ndas_5540
KEGG: scl:sce4001 hypothetical protein; SPTR: C1YPN7 Putative uncharacterized protein; PFAM: Sulfotransferase domain.
  
 
   0.461
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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