STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_4562COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR013595:IPR000073; KEGG: sen:SACE_2935 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; TAP domain protein; SPTR: C1YFN3 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: TAP-like protein; alpha/beta hydrolase fold. (260 aa)    
Predicted Functional Partners:
Ndas_4561
COGs: COG4129 membrane protein; KEGG: sen:SACE_4168 integral membrane protein; SPTR: C1YFN4 Predicted membrane protein, COG4129; PFAM: Bacterial protein of unknown function (DUF939).
       0.773
Ndas_4560
COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR012938:IPR011041:IPR011042; KEGG: tfu:Tfu_0624 putative oxidoreductase; PFAM: glucose sorbosone dehydrogenase; SPTR: C1YFN5 Glucose/sorbosone dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase.
       0.675
Ndas_4466
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: rci:RCIX2240 alpha/beta family hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: C1YGA2 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold.
  
     0.644
Ndas_5402
3-oxoadipate enol-lactonase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: tfu:Tfu_0162 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; PRIAM: 3-oxoadipate enol-lactonase; SPTR: C1YUE4 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold; TIGRFAM: 3-oxoadipate enol-lactonase.
  
     0.623
Ndas_2045
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: msm:MSMEG_4079 putative hydrolase; PFAM: alpha/beta hydrolase fold; SPTR: C1YMY3 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold.
  
     0.568
Ndas_2283
3-oxoadipate enol-lactonase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR012790:IPR000073; KEGG: rxy:Rxyl_1578 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; SPTR: C1YUY2 3-oxoadipate enol-lactonase; TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; TIGRFAM: 3-oxoadipate enol-lactonase.
  
     0.546
Ndas_3240
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073:IPR000639; KEGG: rpd:RPD_3289 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: C1YSQ9 Predicted hydrolase or acyltransferase of alpha/beta superfamily; PFAM: alpha/beta hydrolase fold.
  
     0.528
Ndas_4563
KEGG: hypothetical protein LOC725726; SPTR: C1YFN2 Putative uncharacterized protein.
       0.488
Ndas_0494
Acyl transferase; COGs: COG3321 Polyketide synthase modules and related protein; InterProIPR009081:IPR006162:IPR018201:IPR018294:IPR 016038:IPR001227:IPR016040:IPR016039:IPR016035:IPR011032:I PR016036:IPR014030:IPR014031:IPR014043:IPR006163:IPR013154 :IPR013149:IPR002198; KEGG: sgr:SGR_6179 putative type-I PKS; PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; short-chain dehydrogenase/reductase SDR; SPTR: C1YLQ6 Short chain dehydrogenase/beta-ketoacyl synthase/zinc- [...]
  
 
 0.467
Ndas_0795
8-amino-7-oxononanoate synthase; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterProIPR015424:IPR004839:IPR009081:IPR006162:IPR 015421; KEGG: rba:RB386 saframycin Mx1 synthetase B; PFAM: aminotransferase class I and II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: C1YV16 7-keto-8-aminopelargonate synthetase-like enzyme; PFAM: Phosphopantetheine attachment site; Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase.
  
 
 0.450
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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