STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_4687Transcriptional regulator, TetR family; InterProIPR001647:IPR004111:IPR012287:IPR011075:IPR 009057; KEGG: sen:SACE_3407 TetR family transcriptional regulator; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; SPTR: C1YPH3 Transcriptional regulator, tetR family; PFAM: Tetracyclin repressor, C-terminal all-alpha domain; Bacterial regulatory proteins, tetR family. (259 aa)    
Predicted Functional Partners:
Ndas_0170
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000160:IPR000014:IPR001633:IPR001610:IPR 013655; KEGG: tfu:Tfu_0610 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C1YHV9 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate [...]
  
 
 0.526
Ndas_4940
KEGG: fra:Francci3_2434 hypothetical protein; SPTR: C1YIM3 Putative uncharacterized protein.
  
     0.492
Ndas_4686
NmrA family protein; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030:IPR016040; KEGG: sro:Sros_5449 nucleotide-diphosphate-sugar epimerase; PFAM: NmrA family protein; SPTR: C1YPH4 Predicted nucleoside-diphosphate sugar epimerase; PFAM: NmrA-like family.
       0.411
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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