STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_5170Dihydropyrimidinase; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR011778:IPR006680:IPR011059; KEGG: sgr:SGR_1231 phenylhydantoinase; PFAM: amidohydrolase; SPTR: C1YI50 Dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase. (469 aa)    
Predicted Functional Partners:
Ndas_5171
COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: sco:SCO6411 hydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: C1YI49 Predicted amidohydrolase; PFAM: Carbon-nitrogen hydrolase.
 
 0.998
Ndas_1015
Amidase, hydantoinase/carbamoylase family; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR011650:IPR010158:IPR002933; KEGG: aau:AAur_0749 putative N-carbamoyl-L-amino acid amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: N-carbamoyl-L-amino-acid hydrolase; SPTR: C1YTP3 Amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family.
 
 
 0.945
Ndas_2999
Amidase, hydantoinase/carbamoylase family; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR010158:IPR002933:IPR011650; KEGG: tfu:Tfu_2012 allantoate amidohydrolase; PFAM: peptidase M20; PRIAM: N-carbamoyl-L-amino-acid hydrolase; SPTR: C1YRU1 Amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family.
 
 
 0.937
Ndas_5169
Luciferase-like, subgroup; COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR011251:IPR016048; KEGG: sgr:SGR_1230 putative N5, N10-methylene-tetrahydromethanopterin reductase; PFAM: Luciferase-like, subgroup; SPTR: C1YI51 Methylenetetrahydromethanopterin reductase; PFAM: Luciferase-like monooxygenase.
 
     0.937
pyrB
COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR006132:IPR006130:IPR006131:IPR002082; KEGG: tfu:Tfu_1054 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: C1YWG9 Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGR [...]
 
 0.933
Ndas_5168
NCS1 nucleoside transporter family; COGs: COG1953 Cytosine/uracil/thiamine/allantoin permease; InterPro IPR012681:IPR016160:IPR001248; KEGG: sgr:SGR_1229 putative cytosine/purines/uracil/thiamine/allantoin permease family protein; PFAM: permease for cytosine/purines uracil thiamine allantoin; SPTR: C1YIQ6 NCS1 nucleoside transporter-like protein; TIGRFAM: NCS1 nucleoside transporter family; PFAM: Permease for cytosine/purines, uracil, thiamine, allantoin; TIGRFAM: NCS1 nucleoside transporter family.
 
  
 0.859
pyrR
Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
  
 
 0.770
Ndas_0717
COGs: COG2233 Xanthine/uracil permease; InterPro IPR006042:IPR017588:IPR006043; KEGG: rop:ROP_12700 putative uric acid permease; PFAM: Xanthine/uracil/vitamin C permease; SPTR: C1YNE2 Uracil-xanthine permease; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Permease family; TIGRFAM: uracil-xanthine permease; xanthine permease.
 
  
 0.727
carA
COGs: COG0505 Carbamoylphosphate synthase small subunit; InterProIPR002474:IPR000991:IPR017926:IPR001317:IPR 011702:IPR006220:IPR006274; KEGG: tfu:Tfu_1056 carbamoyl-phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: C1YWK3 Carbamoyl-phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase [...]
 
  
 0.702
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
  
 0.694
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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