STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_5218Ectoine/hydroxyectoine ABC transporter, ATP-binding protein; COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439:IPR014343; KEGG: tfu:Tfu_0306 ABC-type polar amino acid transport system ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1YIP8 Amino acid ABC transporter ATP-binding protein, PAAT family; TIGRFAM: ectoine/hydroxyectoine ABC transporter, ATP-binding protein; PFAM: ABC transporter; TIGRFAM: ectoine/hydroxyectoine ABC transporter, ATP-binding protein. (278 aa)    
Predicted Functional Partners:
Ndas_5216
Ectoine/hydroxyectoine ABC transporter, permease protein EhuC; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR014342:IPR000515; KEGG: tfu:Tfu_0304 amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YIQ0 Amino acid ABC transporter membrane protein 1, PAAT family; TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuC; polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane comp [...]
 
 
 0.983
Ndas_5217
Ectoine/hydroxyectoine ABC transporter, permease protein EhuD; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR014341:IPR010065:IPR000515; KEGG: tfu:Tfu_0305 amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YIP9 Amino acid ABC transporter membrane protein 2, PAAT family; TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuD; polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane comp [...]
 
 0.983
Ndas_5215
Ectoine/hydroxyectoine ABC transporter solute-binding protein; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR014337:IPR001638; KEGG: tfu:Tfu_0303 extracellular solute-binding; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C1YIQ1 Amino acid ABC transporter substrate-binding protein, PAAT family; TIGRFAM: ectoine/hydroxyectoine ABC transporter solute-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: ectoine/hydroxy [...]
 
 
 0.968
Ndas_0669
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: tfu:Tfu_0807 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YNJ1 Amino acid ABC transporter membrane protein 2, PAAT family; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, perm [...]
 
 0.943
Ndas_0670
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: tfu:Tfu_0808 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YNJ0 Amino acid ABC transporter membrane protein 1, PAAT family; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, perm [...]
 
 
 0.942
Ndas_3687
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: kra:Krad_1223 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1YU48 Amino acid ABC transporter membrane protein, PAAT family; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, [...]
 
 0.934
Ndas_4400
Extracellular solute-binding protein family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638:IPR018313; KEGG: tcu:Tcur_0186 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C1YGG7 Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
 
 0.861
Ndas_0671
Extracellular solute-binding protein family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: tfu:Tfu_0809 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C1YNI9 Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
 
 0.809
Ndas_3686
Extracellular solute-binding protein family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638; KEGG: kra:Krad_1224 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: C1YU49 Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
 
 0.768
Ndas_0146
KEGG: tfu:Tfu_0478 hypothetical protein; SPTR: C1YHI6 Putative uncharacterized protein; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
  
 
 0.652
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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