STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_5487Transcriptional regulator, TetR family; InterPro IPR001647:IPR012287:IPR009057; KEGG: tcu:Tcur_4395 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C1YPU5 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family. (205 aa)    
Predicted Functional Partners:
Ndas_4052
KEGG: sma:SAV_5443 hypothetical protein; SPTR: C1YSD7 Putative uncharacterized protein.
  
     0.528
Ndas_5486
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR011701:IPR001411; KEGG: sro:Sros_6564 EmrB/QacA family drug resistance transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1YPU6 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
       0.521
Ndas_5488
Methyltransferase type 12; InterPro IPR013217; KEGG: saq:Sare_0294 methyltransferase type 11; PFAM: Methyltransferase type 12; SPTR: C1YPU4 Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
       0.519
Ndas_2673
InterPro IPR000169; KEGG: sma:SAV_5443 hypothetical protein; SPTR: C1YKH8 Putative uncharacterized protein.
  
     0.515
Ndas_4624
KEGG: sma:SAV_5443 hypothetical protein; SPTR: C1YGJ8 Putative uncharacterized protein.
  
     0.507
Ndas_4577
KEGG: sma:SAV_5443 hypothetical protein; SPTR: C1YFM0 Putative uncharacterized protein.
  
     0.463
Ndas_1034
Methyltransferase type 12; InterPro IPR013217; KEGG: sco:SCO7688 hypothetical protein; PFAM: Methyltransferase type 12; SPTR: C1YVM5 Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.443
Ndas_3968
KEGG: sro:Sros_8591 hypothetical protein; SPTR: C1YKN1 Putative uncharacterized protein.
  
     0.405
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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