node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACZ20405.1 | ACZ20406.1 | Sked_04400 | Sked_04410 | PFAM: Carbohydrate binding domain. | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | 0.545 |
ACZ20406.1 | ACZ20405.1 | Sked_04410 | Sked_04400 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | PFAM: Carbohydrate binding domain. | 0.545 |
ACZ20406.1 | dnaK | Sked_04410 | Sked_04420 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.618 |
ACZ20406.1 | grpE | Sked_04410 | Sked_04430 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | Molecular chaperone GrpE (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. [...] | 0.592 |
ACZ20406.1 | rplO | Sked_04410 | Sked_29550 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.560 |
ACZ20406.1 | rpmE | Sked_04410 | Sked_09910 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.543 |
ACZ20406.1 | rpmJ | Sked_04410 | Sked_29490 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family. | 0.546 |
ACZ20406.1 | rpsB | Sked_04410 | Sked_23610 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family. | 0.543 |
ACZ20406.1 | rpsL | Sked_04410 | Sked_29810 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.578 |
ACZ20406.1 | rpsO | Sked_04410 | Sked_23390 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.553 |
ACZ20406.1 | tuf | Sked_04410 | Sked_29780 | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.646 |
dnaK | ACZ20406.1 | Sked_04420 | Sked_04410 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | 0.618 |
dnaK | grpE | Sked_04420 | Sked_04430 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Molecular chaperone GrpE (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. [...] | 0.999 |
dnaK | rplO | Sked_04420 | Sked_29550 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.476 |
dnaK | rpsB | Sked_04420 | Sked_23610 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family. | 0.780 |
dnaK | rpsL | Sked_04420 | Sked_29810 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.563 |
dnaK | rpsO | Sked_04420 | Sked_23390 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.570 |
dnaK | tuf | Sked_04420 | Sked_29780 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.821 |
grpE | ACZ20406.1 | Sked_04430 | Sked_04410 | Molecular chaperone GrpE (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. [...] | PFAM: Ribonuclease B OB domain; 'Cold-shock' DNA-binding domain; TIGRFAM: cold shock domain protein CspD. | 0.592 |
grpE | dnaK | Sked_04430 | Sked_04420 | Molecular chaperone GrpE (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. [...] | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.999 |