STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_0084Transcriptional regulator, XRE family. (290 aa)    
Predicted Functional Partners:
Snas_6296
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: mes:Meso_0511 HipA-like.
   
 
 0.869
Snas_0083
Hypothetical protein.
       0.773
Snas_3369
PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein.
  
     0.773
Snas_5736
PFAM: protein of unknown function DUF397.
  
     0.772
Snas_4317
Hypothetical protein.
  
     0.770
Snas_5738
PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein.
  
     0.770
Snas_0787
PFAM: protein of unknown function DUF397.
  
     0.750
Snas_1147
PFAM: protein of unknown function DUF742.
  
     0.745
Snas_4878
PFAM: protein of unknown function DUF901; KEGG: cak:Caul_3733 peptidase M56 BlaR1.
  
     0.738
Snas_2844
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: azo:azo0263 two-component system histidine kinase.
  
     0.736
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.