STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_0159PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rlt:Rleg2_2905 short-chain dehydrogenase/reductase SDR. (253 aa)    
Predicted Functional Partners:
Snas_2914
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_B1974 oxidoreductase short-chain dehydrogenase/reductase family.
  
     0.717
Snas_0160
PFAM: regulatory protein TetR; KEGG: swd:Swoo_3433 TetR family transcriptional regulator.
       0.565
Snas_3036
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_0774 short chain dehydrogenase/reductase family oxidoreductase.
  
 
 
 0.451
Snas_1151
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2036 non-ribosomal peptide synthase amino acid adenylation subunit; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
   0.441
Snas_4133
PFAM: Acyl transferase; Beta-ketoacyl synthase; Erythronolide synthase docking; Thioesterase; phosphopantetheine-binding; KEGG: eca:ECA0603 type I polyketide synthase.
  
 
 0.438
Snas_0118
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kpn:KPN_01782 putative deoxygluconate dehydrogenase.
  
 
   0.434
Snas_0161
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: acp:A2cp1_2781 regulatory protein TetR.
       0.404
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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